Create analysis - NetControl4BioMed

Analyses Create analysis

The analysis has been loaded successfully.

In order to create an analysis, the set of target proteins needs to be specified, optionally together with a set of preferred input proteins. All specified proteins must appear in the corresponding network. The analysis will be defined and started in the background, and its results can be afterwards inspected.

Details

Input here the general details of the new analysis.

Name The name of the new analysis.

Description The description of the new analysis. This field is optional.

Network

The analysis will use the network COVID-19 Tutorial Network. If you would like to choose a different network, you can navigate to its corresponding page. You can find all of the public networks here.

Source data

Select here the methods in which the source proteins (to be used as preferred control inputs) will be provided. This is optional, and no option needs to be selected.

Use a manually provided list of source proteins.

Use one or more precompiled collections of source proteins.

Source proteins 0

Input here the identifiers of the source proteins (preferred control inputs) to be used by the new analysis. You can check all of the potential identifiers here.

Source proteins

["MAP2K2","SSTR3","IFNGR1","PDE4C","SELP","GABRB1","PLG","HTR2A","TXNRD1","PRKCB","RXRG","PROS1","HTR1B","CACNB4","TOP2B","NR3C2","JAK1","FGFR4","HTR3A","FCER1G","IL6R","KLKB1","HTR4","SCN3B","SLC12A2","SSTR4","SI","TUBB","CALM1","HRH4","MPL","ALOX5","RAMP1","GABBR2","EDNRA","CD2","PRLR","PTAFR","CDK4","PTGER3","KCND1","NTRK3","TLR9","ROCK2","BCR","RRM2B","TLR4","GHRHR","SV2A","SLC6A2","SSTR5","MTNR1B","GGCX","ADRA1D","SCN8A","POLE","KCNJ11","OXTR","GRIA1","IL2RG","KDR","PRKAG3","AOC3","PRKCQ","TNFSF13B","S1PR3","BCL2","VDR","TFRC","CACNA1E","NR3C1","ANXA5","CA3","KCNJ15","PROCR","KEAP1","HDAC2","NR1I2","ESRRG","HDAC5","SLC9A3","IFNG","NR1H4","BTK","KCNA4","MT-ND1","CD4","KCNA5","BST1","KCNA1","HRH3","SCN4A","ABCC2","MTNR1A","CSF1R","C4A","FGA","IL12B","PSMB8","RARA","CA1","SLC12A4","SERPINC1","KCNMA1","SLC12A5","JUN","CAMLG","ICAM1","HTR2B","JAK2","SLC5A2","CASR","MAPK11","ATP2B2","PLAUR","DRD4","RAMP3","NFKB2","F5","EPHA2","CACNA1A","CALCRL","CSF2RA","AGTR1","PDGFRB","SERPIND1","RXRB","ADORA2B","IL2RB","SERPINB2","CACNA1C","ACLY","TH","ANXA2","DRD2","HCRTR1","SLC6A3","GRIN2A","TYMS","HTR1A","SLC38A3","SLC25A4","SYK","FGFR3","CHRM4","NOS2","PIK3CG","CYSLTR1","NPR2","IL17A","SNAP25","SLC7A11","ATP2A2","PGR","KCNK9","PARP1","CAT","KCNB1","ACE","REN","MAPT","GABBR1","CACNA1D","POLA1","VWF","GRIN2C","ADH1A","FCGR2B","TRPA1","KCNJ3","PAH","PRKAG2","HDAC8","SLC12A1","DRD5","SDHA","CD274","PDE5A","GAST","RYR2","EZH2","HMMR","CTLA4","PPARG","PDE1B","CNR1","ERBB2","CHRM5","CA2","RET","ADRA2A","CALY","PTGIR","CASP3","CD3D","DPP4","LDHB","BGLAP","EPOR","FN1","FGF2","CACNA1G","CD33","PDE4A","CNR2","ADRA1B","IKBKB","LTA","TRPV3","PIK3CA","FCGR2A","GLP1R","AVPR1B","PIK3CD","ABCC8","CA9","YES1","IDH1","RRM2","MAOA","FCGR2C","AVPR2","ERBB4","TRPM8","MAP2K1","LEPR","TGFBR2","AR","HTR1E","F11","GRIN1","PTGFR","TUBA4A","MAPK1","PGF","CHRM3","EEF2","ANXA1","MAP4","HMGCR","AKR1B1","KCNJ12","FCGR1A","TSHR","INSR","HBB","CACNB2","PDE3A","PRKCI","IDH3A","THRA","LHCGR","F3","TUBB4B","TACSTD2","CXCR4","TFPI","TLR7","PDE4B","TOP1","IL4R","CD79B","ESR2","SCN11A","HDAC7","ADRA2C","KCND2","VEGFB","SRC","COL2A1","CCR5","NPR1","KCNJ10","KCNJ1","F10","CACNA1H","HRH1","ITGAX","NOD2","RARG","HCRTR2","CACNA2D3","IL3RA","SCNN1G","ITGA4","PDE3B","FGFR2","MAP1A","RAMP2","FLT3","IMPDH2","CD22","KCNA3","RARB","FGB","KCNN2","PTH2R","SERPINE1","F2R","C3","ADORA2A","KIT","PTGER1","PRKAA2","BRAF","TUBB1","GABRB2","HDAC1","KCNN4","LCK","KCNJ2","FRK","TUBG1","IL1B","BLVRB","TRHR","SCN1A","GLRA1","ADA","MS4A1","CD247","CYP19A1","PROC","KLK3","CYP17A1","MAP2","SLC5A5","MC1R","MAP3K1","ATP2B4","VEGFA","FGG","OPRM1","PRKAB1","TYR","DCK","DPYD","MME","IFNAR1","TRPV1","IDE","NOS3","TUBB3","TPH2","TEK","ADRB2","KCNK3","SYT2","PPIA","XPO1","TLR2","RXRA","MTOR","RRM1","FFAR4","APP","PPIF","PPARD","TFR2","PDK1","TUBD1","CACNA1S","ADRB3","GCGR","SMO","PRKCD","PPARA","P2RY12","ANXA4","PDGFRA","F2","PDE4D","S1PR5","C1S","F9","PRKCG","TGFB1","DDR2","C1R","PSMB10","PRKCZ","GRM5","GABRG2","FKBP1A","TNFSF11","PRKAA1","TOP2A","ADRA1A","ADRA2B","FNTB","GUCY2C","FCGR3A","CDK6","GABRA1","KCNH2","XDH","MAPK3","ELANE","CD86","EGFR","MET","SLC38A2","IL23A","KCNA2","SLC6A1","PTGS2","CCKAR","ALDH2","DNMT1","BMPR1A","KCNN1","FFAR1","GHR","ATP2B1","S1PR1","DDC","COMT","CALCA","BDKRB2","NOS1","VAMP1","CYSLTR2","DRD1","ACTN1","SLC18A2","CD80","HDAC4","CACNB1","GRIK1","CHRNA7","SCN3A","DPEP1","GRIN2B","PSMB9","IL5RA","POLB","CD3E","FGF1","MC4R","SCN2A","SLC6A4","CD19","SCNN1A","IGF1R","ROCK1","CD3G","JAK3","ABCA1","TNF","PTGER4","NFKB1","AXL","TPH1","TPO","ITGA2B","CSF3R","ITGAL","ADORA1","PDCD1","CHRM1","HTR2C","PRKCE","CHRM2","GSR","AVPR1A","HTR7","IFNGR2","CACNG2","FGF23","ADRB1","FLT4","F8","OPRD1","PRKCA","COL3A1","ITGB3","SLC12A3","KCNJ4","EGF","ALK","ATP2C1","GNRHR","HTR1D","ROS1","HTR6","ATP1A1","GAPDH","FASN","COL1A1","GRIN2D","KCND3","RAF1","CALCB","ESR1","MS4A2","CCND1","MMP9","F12","SCN9A","ADORA3","MRC1","TUBA1A","PTGER2","ITGB1","PNP","RYR1","TNFRSF1A","XIAP","BMPR2","IL1R1","FNTA","ODC1","CALCR","FGFR1","IL6","FSHR","LPL","CFTR","IL2RA","OPRK1","HTR1F","HDAC6","SSTR1","NTRK1","MTR","HDAC9","CACNA1B","SSTR2","IFNAR2","ATP2A1","NTRK2","FLT1","EDNRB","ITGB7","ALB","ABCC1","DRD3","SCN5A","TACR1","GRIK2","NPY","CCKBR","SCNN1B","ATIC","ITGAV","PLAT","F7","LDHA","KCNQ1","PARP3","ABL1","HRH2","CD44","HDAC3","CSF2RB","PTK2B","PRKAG1","F13A1","SCN10A","PDE10A","PTH1R","HDAC10","IL5","THRB"]

The source proteins to be used by the new analysis, formatted as a JSON string array. This field should not be directly interacted with, the form entries below should be used to edit the data instead.

Source protein identifiers

Line separator:

Choose file

The source proteins to be used by the new analysis. The data can also be uploaded from a file; in this case, the file content will appear, unchanged, above.

Source protein collections 0

Select here the source collections to be used by the new network. This can be done either in addition to, or instead of the source proteins above. You can check all of the available drug-target data here.

	Collection	Links

Target data

Select here the methods in which the target proteins will be provided. At least one option needs to be selected.

Use a manually provided list of target proteins.

Use one or more precompiled collections of target proteins.

Target proteins 0

Input here the identifiers of the target proteins to be used by the new analysis. You can check all of the potential identifiers here.

Target protein identifiers

Line separator:

Choose file

The target proteins to be used by the new analysis. The data can also be uploaded from a file; in this case, the file content will appear, unchanged, above.

Target protein collections 0

Select here the target collections to be used by the new network. This can be done either in addition to, or instead of the target proteins above. You can check all of the available cell-line data here.

	Collection	Links